[Bioperl-l] Support for KEGG

[Chris Fields]

No, not really.  I tend to do anything related to KEGG in R/BioC, but we
would be open for anyone wanting to add something.

Thinking about this, it probably wouldn't be hard to do if one exploited
the SQLite KEGG db that R has. 

chris

On Wed, 2010-04-07 at 12:14 -0400, ARTHUR GOLDBERG wrote:
> Hi
> 
> Does Bioperl support Kegg non-sequence data such as pathways?  
> (Bio::SeqIO::kegg supports KEGG sequence data.)
> For example, Kegg's web services interface provides loads of access to  
> Kegg pathway, gene and enzyme info. However, even it doesn't support  
> things like the pathway hierarchy distributed in files in ftp://ftp.genome.jp/pub/kegg/brite/organisms/ 
> .
> 
> BR
> A
> 
> 
> 
> Arthur P. Goldberg, PhD
> 
> Research Scientist in Bioinformatics
> Plant Systems Biology Laboratory
> www.virtualplant.org
> 
> Visiting Academic
> Computer Science Department
> Courant Institute of Mathematical Sciences
> www.cs.nyu.edu/artg
> 
> artg at cs.nyu.edu
> New York University
> 212 995-4918
> Coruzzi Lab
> 8th Floor Silver Building
> 1009 Silver Center
> 100 Washington Sq East
> New York NY 10003-6688
> 
> 
> 
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