[Bioperl-l] Problems installing latest stable bioperl-db (1.6)

Chris Fields cjfields at illinois.edu
Wed Sep 23 17:47:56 UTC 2009


Appears Array::Compare is used for Test::Warn, so it isn't a true  
requirement (probably a test_requires or somesuch).

chris

On Sep 23, 2009, at 10:36 AM, Mark A. Jensen wrote:

> hi Tony- missing prereqs are the issue with this message,yes-
> the brute force approach would be to install each of these
> as they come up; you can do
>
> $ cpan
> cpan> install Array::Compare
>
> etc., then attempt the bioperl-db install again; lather, rinse,  
> repeat.
> MAJ
> ----- Original Message ----- From: "Anthony Pemberton" <A.J.Pemberton at bham.ac.uk 
> >
> To: <bioperl-l at bioperl.org>
> Sent: Tuesday, September 22, 2009 1:06 PM
> Subject: [Bioperl-l] Problems installing latest stable bioperl-db  
> (1.6)
>
>
>> Folks,
>>
>> I am experiencing problems installing bioperl-db. I followed the  
>> instructions on the website both installing via CPAN and  
>> downloading the source tarball. Get the same error. I think I have  
>> missing prerequistes, the first error I get is:
>>
>> Can't locate Array/Compare.pm in @INC (@INC contains: t/lib t /usr/ 
>> local/BioPerl-db-1.6.0/blib/lib
>> /usr/local/BioPerl-db-1.6.0/blib/arch /usr/local/BioPerl-db-1.6.0 / 
>> usr/lib64/perl5/5.8.5/x86_64-linux-thread-multi
>> /usr/lib/perl5/5.8.5 /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux- 
>> thread-multi /usr/lib/perl5/site_perl/5.8.5
>> /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.5/x86_64- 
>> linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.5
>> /usr/lib64/perl5/vendor_perl/5.8.3/x86_64-linux-thread-multi /usr/ 
>> lib/perl5/vendor_perl .) at t/lib/Test/Warn.pm line 228.
>>
>> Can anyone help?
>>
>> Regards,
>>
>> Tony P.
>>
>>
>> **************************************************************
>> Mr. A. Pemberton Tel:+44 121 414 3388
>> School of Biosciences, Fax:+44 121 414 5925
>> The University of Birmingham                     
>> Email:a.j.pemberton at bham.ac.uk
>> Birmingham B15 2TT U.K.
>> **************************************************************
>>
>>
>>
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>
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