[Bioperl-l] Getting all annotations

Emanuele Osimo e.osimo at gmail.com
Fri Sep 18 22:33:22 UTC 2009


Hello,
I was trying to figure out how to get from the Entrez database all the
reference annotation for a given genomic zone.
For example: I want to know which genes, transcripts, microRNAs etc are
present in chr 6 from 100kbp to 200kbp.
Is there a database that is arranged as a continuum (by sequence) instead of
by feature (gene, transcript etc)?

Thanks
Emanuele



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