[Bioperl-l] need help urgently

[Neeti Somaiya]

Hi,

Thanks for the reply.

I am using the script exactly as it is given here :

http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#esummary_-.3E_efetch

-Neeti
Even my blood says, B positive



On Sat, Sep 5, 2009 at 7:14 PM, Chris Fields<cjfields at illinois.edu> wrote:
> On Sep 4, 2009, at 11:52 PM, Neeti Somaiya wrote:
>
>> Ok, so I reinstalled bioperl and was able to run the EUtilities code
>> for my gene id.
>> But I am facing two issues :-
>>
>> 1) When I give multiple gene ids, it still returns data of only the
>> first gene id
>
> This sounds like it's not iterating correctly.  You'll need to post your
> version of the script.
>
>> 2) The script returns the entire entry, and I am not able to figure
>> out how to just fetch the sequence, and if possible, in FASTA format.
>> I could not figure it out from the documentation.
>
> I recall this working last time I used it (I think June or July).  Could you
> post the script you are using?
>
> (realize this is a holiday weekend in the states, so you might have a
> delayed response from me or others)
>
>> Thanks.
>>
>> -Neeti
>> Even my blood says, B positive
>
> chris
>