[Bioperl-l] remove overlapped sequences from Blastn results
Marcelo Iwata
marcelo011982 at gmail.com
Tue Sep 1 17:33:51 UTC 2009
Hi
I've made a blastn with such arguments:
../bin/blastall -p blastn -d DBBank -i myFasta.FASTA.txt -e 0.00001 -o
Out2Blast.txt -a 8
and i want a script that removes overlapped sequences from the results..
For example, if a unigene A has the hit->start and hit-end as 1 and 4, and
the B is at 2 and 3, respectively, the script remove second one.
I want to know if it already exist, and if not, is there a library that
works with such issue.
I know that at Bio::DB::gff we have overlapping_features. But , if something
directly exist (works with blast format), is better for me.
thanks in advance
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