[Bioperl-l] Getting all annotations

[Dan Bolser]

Hi Emanuele,

I guess you were Emos in irc://irc.freenode.net/#bioperl ?


I think the answer to your question can be found here:

http://www.biodas.org


All the best,
Dan.

2009/9/18 Emanuele Osimo <e.osimo at gmail.com>:
> Hello,
> I was trying to figure out how to get from the Entrez database all the
> reference annotation for a given genomic zone.
> For example: I want to know which genes, transcripts, microRNAs etc are
> present in chr 6 from 100kbp to 200kbp.
> Is there a database that is arranged as a continuum (by sequence) instead of
> by feature (gene, transcript etc)?
>
> Thanks
> Emanuele
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