[Bioperl-l] BioPerl 1.6.0 alpha 3 released
Kristine Briedis
KBriedis at accelrys.com
Wed Sep 23 16:52:09 EDT 2009
Hi Chris,
We tested BioPerl 1.6.0 alpha 3 with our set of Pipeline Pilot regressions and noticed a small problem. The fasta validation check for '>' in SeqIO::fasta (line 127) throws when used with Index::Fasta on Windows because the position after '>' is being indexed. It looks like you already fixed the same problem for Linux (comment in line 190 of Index::Fasta). Do you want me to put this into bugzilla? Let me know if you have any questions. Thanks!
Cheers,
Kristine
-----Original Message-----
From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Chris Fields
Sent: Tuesday, September 22, 2009 1:29 PM
To: BioPerl List
Subject: [Bioperl-l] BioPerl 1.6.0 alpha 3 released
The third alpha is now out and propagating it's way around the
intertubes:
http://search.cpan.org/~cjfields/BioPerl-1.6.0_3/
Pick your favorite archive here:
http://bioperl.org/DIST/RC/
This includes some unmerged changes from 1.6.0. Test failures from
the last alpha indicated these somehow were missed, so I basically ran
a global diff against main trunk to check for missing commits (all
located in t/ as it turned out).
Also fixed is are the SeqFeature_SQLite.t failures; this is a file
autogenerated with Build.PL tests that somehow made it's way into the
last alpha release. This is now properly cleaned up along with it's
test database using './Build clean'. BTW, very nice SQLite
implementation; I may be using it!
Please let me know if anything pops up; I'm hoping to release 1.6.1 by
this Thursday-Friday.
Enjoy!
chris
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