[Bioperl-l] problem in installation of bioperl

[Mark A. Jensen]

I thought about it, but it seems like such a kludge--- I think the
key is to get SOAP-Lite-0.69; (I think the problem arose because 0.71
uses the Apache module...But this was an issue only for 5.10, IIRC) --
should we change the dependency instead?
----- Original Message ----- 
From: "Chris Fields" <cjfields at illinois.edu>
To: ""徐相"" <simonstudy at 163.com>
Cc: "Mark A. Jensen" <maj at fortinbras.us>; "bioperl-l" 
<bioperl-l at lists.open-bio.org>
Sent: Wednesday, October 28, 2009 11:47 AM
Subject: Re: [Bioperl-l] problem in installation of bioperl


Mark, do we need to modify those instructions on the wiki?

chris

PS - I am working on a way to centralize things a bit and autogenerate
certain pages that are replicated in both the distribution and the
wiki (README, INSTALL, DEPENDENCIES, BioPerl.pm, etc).  ATM I'm
thinking these will be POD in svn that will be wikified and auto-
updated, or vice versa.

On Oct 28, 2009, at 9:47 AM, 徐相 wrote:

> Hi Mark,
>
> Thanks for your help. It works.
>
> Xiang
>
>
> 2009-10-28
>
>
>
> 徐相
>
>
>
> 发件人： Mark A. Jensen
> 发送时间： 2009-10-28  22:02:49
> 收件人： 徐相; Chris Fields
> 抄送： bioperl-l
> 主题： Re: [Bioperl-l] problem in installation of bioperl
>
> Xiang-
> Here's a procedure I know will get around this. Make sure you
> have the module PPM-Repositories installed.
> Run ppm-shell, then do
> ppm> repo add http://bioperl.org/DIST
> ppm> repo add uwinnipeg
> ppm> repo add trouchelle
> If you do
> ppm> repo
> you should see something like
> You should see something like
> │ id │ pkgs  │ name                           │
> │  1 │ 11431 │ ActiveState Package Repository │
> │  2 │    14 │ bioperl.org                    │
> │  3 │   291 │ uwinnipeg                      │
> │  4 │ 11755 │ trouchelle                     │
> Now do
> # turn off ActiveState, trouchelle repos
> ppm> repo off 1
> ppm> repo off 4
> # to get SOAP-Lite-0.69 from uwinnipeg...
> ppm> install SOAP-Lite
> # turn ActiveState, trouchelle back on...
> ppm> repo on 1
> ppm> repo on 4
> # now try...
> ppm> install BioPerl
> cheers MAJ
> ----- Original Message -----
> From: "徐相" <simonstudy at 163.com>
> To: "Chris Fields" <cjfields at illinois.edu>
> Cc: "bioperl-l" <bioperl-l at lists.open-bio.org>
> Sent: Wednesday, October 28, 2009 9:43 AM
> Subject: Re: [Bioperl-l] problem in installation of bioperl
>> Hi Chris,
>> Thanks for your answer. I know that the reason may be the  dependency, but I
>> still don't know where to find the needed package to install. It is  not in 
>> the
>> repositories which are said on the Bioperl website. Could you help  me to
>> figure it out.
>>
>> Xiang
>> 2009-10-28
>>
>>
>>
>> 徐相
>>
>>
>>
>> 发件人： Chris Fields
>> 发送时间： 2009-10-28  20:10:52
>> 收件人： 徐相
>> 抄送： bioperl-l
>> 主题： Re: [Bioperl-l] problem in installation of bioperl
>>
>> This should only be a warning (the ActiveState SOAP-Lite package has
>> this dependency).  It should still install.
>> chris
>> On Oct 28, 2009, at 6:43 AM, 徐相 wrote:
>>> Hi all,
>>>
>>> I got a problem when I installed Bioperl with activeperl ppm on
>>> Windows platform. When I marked the Bioperl package for install in
>>> ppm, I got a warning message which said "WARNING: Can't find any
>>> package that provides Apache:: for SOAP-Lite". I had added all the
>>> repository links to ppm, which is suggested on the Bioperl wiki web.
>>> Is there anyone who knows what is the problem and how to fix it?
>>> Thanks in advance.
>>>
>>> Xiang
>>>
>>> 2009-10-28
>>>
>>>
>>>
>>> 徐相
>>>
>>> _______________________________________________
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>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
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