[Bioperl-l] BioPerl Installation Problem...Please help me...

[Chris Fields]

That was a bit of a run-on.  Shows I need my coffee...

chris

On Oct 7, 2009, at 7:57 AM, Chris Fields wrote:

> The PPM hasn't been updated for Windows as of yet.  I would assume  
> if you use the specified version of ActivePerl it should work still,  
> but only for 1.5.2.
>
> I am working on getting a PPM working for 1.6.1 (it was supposed to  
> be posted last week) but have been flooded with other work, though  
> it isn't off my agenda, just pushed back on the priority list a wee  
> bit, until I can get a few other things going.
>
> chris
>
> On Oct 5, 2009, at 3:13 AM, Prem wrote:
>
>> Hello sir,
>>
>>
>>
>> I am Prem Krishnan, doing MSc. in Computational Biology.
>>
>> I am interested in Perl language and now I am started studying  
>> Bioperl.
>>
>> But I met with some problems during the installation.
>>
>>
>>
>> Details are given below,
>>
>>
>>
>> Using operating system      :-       *Windows XP 2 version*
>>
>> Perl Version                      :-       *Active Perl 5.8.8.819*
>>
>>
>>
>> I started installation using GUI method.
>>
>> I followed the guidelines from the site
>> http://www.bioperl.org/wiki/Installing_Bioperl_on_Windows.
>>
>>
>> The steps in that link includes the following,
>> Installation using the Perl Package Manager GUI Installation
>>
>> 1) Start the Perl Package Manager GUI from the Start menu.
>>
>> 2) Go to Edit >> Preferences and click the Repositories tab. Add a  
>> new
>> repository for each of the following (note the difference based on  
>> the perl
>> version):
>>
>> Repositories to add
>>
>> *Name *
>>
>> *perl 5.8 *
>>
>> *perl 5.10 *
>>
>> BioPerl-Regular Releases
>>
>> http://bioperl.org/DIST
>>
>> http://bioperl.org/DIST
>>
>> BioPerl-Release Candidates
>>
>> http://bioperl.org/DIST/RC
>>
>> http://bioperl.org/DIST/RC
>>
>> Kobes
>>
>> http://theoryx5.uwinnipeg.ca/ppms
>>
>> http://cpan.uwinnipeg.ca/PPMPackages/10xx/
>>
>> Bribes
>>
>> http://www.Bribes.org/perl/ppm <http://www.bribes.org/perl/ppm>
>>
>> http://www.Bribes.org/perl/ppm <http://www.bribes.org/perl/ppm>
>>
>> tcool
>>
>> http://ppm.tcool.org/archives/
>>
>> NA
>>
>> 3) Select View >> All Packages.
>>
>> 4) In the search box type bioperl.
>>
>> 5) Right click the latest version of Bioperl available and choose  
>> install.
>> (Note for users of previous Bioperl releases: you should not have  
>> to use the
>> Bundle-BioPerl package anymore.)
>>
>> 5a) From bioperl 1.5.2 onward, all 'optional' pre-requisites will  
>> be marked
>> for installation. If you see that some of them complain about  
>> needing a
>> command-line installation (eg. XML::SAX::ExpatXS), and you want those
>> particular pre-requisites, stop now (skip step 6) and see the  
>> 'Command-line
>> Installation' section.
>>
>> 6) Click the green arrow (Run marked actions) to complete the  
>> installation.
>>
>>
>>
>> *I had completed the first ‘Three’ steps*. But when I tried to  
>> execute
>> the*fourth step
>> * I couldn’t find any *bioperl packages*.
>>
>>
>>
>> What I can I do to make my installation successful? Please help me.
>>
>> I think the information explained above is enough for you to  
>> understand my
>> problem.
>>
>> Thanks in advance…
>>
>>
>> Prem krishnan
>> There can be miracles if you believe in you...
>> http://www.google.com/profiles/premkrishnanbv
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
>
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