[Bioperl-l] problem with bioperl install
Chris Fields
cjfields at illinois.edu
Sat May 30 02:40:49 UTC 2009
Kristina,
You aren't running as superuser:
> term dump: > > dhcp-0019353043-25-35:BioPerl-1.6.0 kristinafontanez
$ cpan
You'll need to run cpan using 'sudo cpan' if installing modules
anywhere requiring superuser permissions.
chris
On May 29, 2009, at 5:10 PM, Sendu Bala wrote:
> Kristina Fontanez wrote:
>> Hello everyone-
>> Sendu - I took your advice but doing Install Bundle::CPAN did not
>> take care of the dependencies. It still failed. See attached txt
>> file with my terminal output. Does anyone have any idea how this
>> might be?
>
> From reading the output it seems like perhaps you don't have 'make'
> or there is something wrong when using it. If you're on a mac you
> may need to install the dev tools. Someone else want to jump in here
> with advice?
>
> Also, check your CPAN configuration to ensure it is trying to use
> the correct make commands. ('o conf' etc.)
>
>
>> If I wanted to wipe all perl from my computer and simply start
>> over, how might this be accomplished?
>
> Don't do that. At least not until you know you have a working make
> setup.
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
More information about the Bioperl-l
mailing list