[Bioperl-l] the binary formerly known as WU-BLAST (Was: experimental Bio::Search::Tiling implementation)
Chris Fields
cjfields at illinois.edu
Wed May 20 12:23:58 UTC 2009
On May 19, 2009, at 11:06 PM, Erich Schwarz wrote:
> On Tue, 19 May 2009, Robert Buels wrote:
>
>> Are the developers of RepeatMasker and RepeatModeler aware of this
>> availability problem? Perhaps they have some ideas?
>
> Now that you point it out, I had taken it for granted that they
> already knew, but shouldn't have assumed that. So, thanks for
> cc:ing Dr. Hubley!
>
> (This is a somewhat non-BioPerl-ish topic -- thanks for
> everybody's collective patience with that. On the other hand, given
> how prevalent a dependency WU-BLAST is for a lot of bioinformatics
> Perl code, maybe this isn't *so* off-topic after all...)
>
>
> --Erich
There does seem to be a preference for WU-BLAST over BLAST in many
cases, so I think it's relevant. I hate to see it go closed-source
and commercial.
chris
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