[Bioperl-l] Asking for advice on full EMBL extraction
brian li
brianli.cas at gmail.com
Thu May 7 01:10:46 UTC 2009
Dear all,
Recently I have to extract all EMBL entries and put them into
relational database so that our report generation tool can access the
data.
I used Bio::SeqIO::embl to get entries one by one, but can not
move on when dealing with big million-line entries. Segmentation Fault
popped. And as currently SeqBuilder is not integrated into
Bio::SeqIO::embl, SeqBuilder->add_unwanted_slot can't help
(http://bugzilla.open-bio.org/show_bug.cgi?id=2823).
Is there another way to get entires one by one with BioPerl?
Brian
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