[Bioperl-l] problem with bioperl install
Kristina Fontanez
fontanez at fas.harvard.edu
Fri May 29 21:58:12 UTC 2009
Hello everyone-
Sendu - I took your advice but doing Install Bundle::CPAN did not take
care of the dependencies. It still failed. See attached txt file with
my terminal output. Does anyone have any idea how this might be?
If I wanted to wipe all perl from my computer and simply start over,
how might this be accomplished?
Thanks,
Kristina
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Kristina Fontanez
PhD candidate
Department of Organismic and Evolutionary Biology
Cavanaugh lab
Harvard University
16 Divinity Ave.
Cambridge, MA 02138
tel: 617-495-1138
fax: 617-496-6933
email: fontanez at fas.harvard.edu
On May 29, 2009, at 5:34 PM, Sendu Bala wrote:
Mark A. Jensen wrote:
> The message says you are first updating your CPAN.pm.
> That module needs modules you don't have, so
> use cpan to install the dependencies you don't have, viz.
>> Test::Harness
>> File::HomeDir
> $ cpan
>> install Test::Harness
> etc.
> Then install CPAN.pm again (or run the Bioperl install again).
Install Bundle::CPAN instead; that will take care of its dependencies
and leave you in a good state to install BioPerl.
Alternatively, if using and updating CPAN turns into too much of a
hassle, do it the 'hard way' (which is probably really the easier way):
http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_MODULES_THE_HARD_WAY
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