[Bioperl-l] looks like a Bio::SeqIO error

fungazid fungazid at yahoo.com
Fri May 15 14:06:52 EDT 2009


Ok, thank you all very very much,

The problems were solved completely:

1) Bioperl 1.6 was installed (just needed to install XML-SAX)

2) after changing '-format' to 'Fasta' instead of 'largefasta', all problems
were gone. 

my $seqin = Bio::SeqIO->new('-format'=>'Fasta','-file'=>$file1);

LOOP1: while ( my $seqobj1 = $seqin->next_seq())

{ ....

-- 
View this message in context: http://www.nabble.com/looks-like-a-Bio%3A%3ASeqIO-error-tp23559474p23564748.html
Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.



More information about the Bioperl-l mailing list