[Bioperl-l] experimental IO module for exporting OWL from GFF
Chris Mungall
cjm at berkeleybop.org
Fri Jun 26 00:32:05 UTC 2009
I've written a module Bio::FeatureIO::seqont_owl, which generates
Sequence Ontology compliant RDF/OWL. This will allow for example
loading of GFF into triplestores and inference using OWL reasoners.
- It's experimental, fairly incomplete, and subject to change
- Relies on an experimental extension of SO
- Probably of interest to a minority of bp users
- It's not yet fully documented (but there will be a paper)
- It doesn't introduce any additional dependencies (all done via
XML::Writer, which is already a dependency)
- Doesn't otherwise impinge on existing code
I'd like to get this under source control. Is the appropriate place
for this:
- HEAD
- a branch
- bioperl-dev
- a separate repository
?
Cheers
Chris
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