[Bioperl-l] Next-gen modules

[Elia Stupka]

Excellent, I was thinking of working on Maq and BowTie as priorities.

Elia

On 17 Jun 2009, at 14:28, John Marshall wrote:

> On 17 Jun 2009, at 12:29, Elia Stupka wrote:
>> Similarly, there seems to be little in bioperl-run to support tools  
>> that have been developed in this area, such as Maq, BowTie, TopHat,  
>> etc?
>
> FYI I have a Bio::Tools::Run::Velvet wrapper [1] that I plan to  
> submit in the not too distant future.  (First it needs some "blah  
> blah" replaced with actual documentation and a test suite.)
>
> Cheers,
>
>    John
>
> [1] http://www.ebi.ac.uk/~zerbino/velvet/
>
>
> -- 
> The Wellcome Trust Sanger Institute is operated by Genome  
> ResearchLimited, a charity registered in England with number 1021457  
> and acompany registered in England with number 2742969, whose  
> registeredoffice is 215 Euston Road, London, NW1  
> 2BE._______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

---
Senior Lecturer, Bioinformatics
UCL Cancer Institute
Paul O' Gorman Building
University College London
Gower Street
WC1E 6BT
London
UK

Office (UCL): +44 207 679 6493
Office (ICMS): +44 0207 8822374

Mobile: +44 7597 566 194
Mobile (Italy): +39 338 8448801