[Bioperl-l] [patch] Bio/TreeIO.pm POD patch
Jay Hannah
jay at jays.net
Thu Jul 9 19:47:02 UTC 2009
Hello,
$tree->size throws this error:
Can't locate object method "size" via package "Bio::Tree::Tree" at
conv.pl line 17, <GEN0> line 1.
Below, a POD patch to Bio::TreeIO to fix (sidestep) that problem and
make podchecker happier.
Thanks,
j
http://clab.ist.unomaha.edu/CLAB/index.php/User:Jhannah
Index: Bio/TreeIO.pm
===================================================================
--- Bio/TreeIO.pm (revision 15841)
+++ Bio/TreeIO.pm (working copy)
@@ -18,13 +18,11 @@
=head1 SYNOPSIS
- {
- use Bio::TreeIO;
- my $treeio = Bio::TreeIO->new('-format' => 'newick',
- '-file' => 'globin.dnd');
- while( my $tree = $treeio->next_tree ) {
- print "Tree is ", $tree->size, "\n";
- }
+ use Bio::TreeIO;
+ my $treeio = Bio::TreeIO->new('-format' => 'newick',
+ '-file' => 'globin.dnd');
+ while( my $tree = $treeio->next_tree ) {
+ print "Tree has ", $tree->number_nodes, " nodes.\n";
}
=head1 DESCRIPTION
@@ -45,11 +43,11 @@
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
=head2 Support
-
+
Please direct usage questions or support issues to the mailing list:
-
+
L<bioperl-l at bioperl.org>
-
+
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
More information about the Bioperl-l
mailing list