[Bioperl-l] Bio::SeqIO::swiss.pm module help
yewcoccus
yewcoccus at gmail.com
Sun Jul 5 02:39:23 UTC 2009
Hi all,
I want to parse uniprot_sprot.dat, get each of the features. but I found it is hard to understand how to use the Bio::SeqIO::swiss.pm module. I will be appreciate if there is anyone who can help.
ID 002R_IIV3 Reviewed; 458 AA.
AC Q197F8;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 11-JUL-2006, sequence version 1.
DT 16-JUN-2009, entry version 10.
DE RecName: Full=Uncharacterized protein 002R;
GN ORFNames=IIV3-002R;
OS Invertebrate iridescent virus 3 (IIV-3) (Mosquito iridescent virus).
OC Viruses; dsDNA viruses, no RNA stage; Iridoviridae; Chloriridovirus.
OX NCBI_TaxID=345201;
OH NCBI_TaxID=7163; Aedes vexans (Inland floodwater mosquito) (Culex vexans).
OH NCBI_TaxID=42431; Culex territans.
OH NCBI_TaxID=332058; Culiseta annulata.
OH NCBI_TaxID=310513; Ochlerotatus sollicitans (eastern saltmarsh mosquito).
OH NCBI_TaxID=329105; Ochlerotatus taeniorhynchus.
OH NCBI_TaxID=7183; Psorophora ferox.
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16912294; DOI=10.1128/JVI.00464-06;
RA Delhon G., Tulman E.R., Afonso C.L., Lu Z., Becnel J.J., Moser B.A.,
RA Kutish G.F., Rock D.L.;
RT "Genome of invertebrate iridescent virus type 3 (mosquito iridescent
RT virus).";
RL J. Virol. 80:8439-8449(2006).
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DR EMBL; DQ643392; ABF82032.1; -; Genomic_DNA.
DR RefSeq; YP_654574.1; -.
DR GeneID; 4156251; -.
PE 4: Predicted;
FT CHAIN 1 458 Uncharacterized protein 002R.
FT /FTId=PRO_0000377938.
SQ SEQUENCE 458 AA; 53921 MW; E46E5C85D7ACA139 CRC64;
MASNTVSAQG GSNRPVRDFS NIQDVAQFLL FDPIWNEQPG SIVPWKMNRE QALAERYPEL
QTSEPSEDYS GPVESLELLP LEIKLDIMQY LSWEQISWCK HPWLWTRWYK DNVVRVSAIT
FEDFQREYAF PEKIQEIHFT DTRAEEIKAI LETTPNVTRL VIRRIDDMNY NTHGDLGLDD
LEFLTHLMVE DACGFTDFWA PSLTHLTIKN LDMHPRWFGP VMDGIKSMQS TLKYLYIFET
YGVNKPFVQW CTDNIETFYC TNSYRYENVP RPIYVWVLFQ EDEWHGYRVE DNKFHRRYMY
STILHKRDTD WVENNPLKTP AQVEMYKFLL RISQLNRDGT GYESDSDPEN EHFDDESFSS
GEEDSSDEDD PTWAPDSDDS DWETETEEEP SVAARILEKG KLTITNLMKS LGFKPKPKKI
QSIDRYFCSL DSNYNSEDED FEYDSDSEDD DSDSEDDC
//
2009-07-05
yewcoccus
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