[Bioperl-l] Bioperl Entrez Esearch

[Chris Fields]

Hard to determine what to do w/o seeing any code or knowing what these  
warnings/errors are.

BTW, these exceptions/warnings are there for a good reason (either a  
server side issue or a bug in the code).

chris

On Jul 21, 2009, at 10:07 AM, Rajasekar Karthik wrote:

> Russell / Others,
> The utilities keep printing out warnings and errors. Is there any  
> way to
> a) either not print at all
> b) or send them to some other log file other than apache's error.log
>
> Thanks.
>
> On Wed, Jul 15, 2009 at 5:34 PM, Rajasekar Karthik <karthik085 at gmail.com 
> >wrote:
>
>> that helps - thanks!!!
>>
>>
>> On Tue, Jul 14, 2009 at 6:33 PM, Smithies, Russell <
>> Russell.Smithies at agresearch.co.nz> wrote:
>>
>>> You sure can.
>>> Take a look at http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook
>>>
>>>
>>> --Russell
>>>
>>>> -----Original Message-----
>>>> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
>>>> bounces at lists.open-bio.org] On Behalf Of Rajasekar Karthik
>>>> Sent: Wednesday, 15 July 2009 10:23 a.m.
>>>> To: bioperl-l at lists.open-bio.org
>>>> Subject: [Bioperl-l] Bioperl Entrez Esearch
>>>>
>>>> Hi,
>>>> I an new to Bioperl. How can I do an Entrez Esearch using Bioperl?
>>>>
>>>> For example, I want to do an exact title search in pubmed
>>>> Title: Guidelines for quantitative rt-PCR
>>>>
>>>> Using HTTP Get, I would do something like this
>>>> URL:
>>>>
>>> http://www.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&field=titl&te
>>>> rm=Guidelines%20for%20quantitative%20rt-PCR
>>>> to get the response XML.
>>>>
>>>> How can I use Bioperl to do the above action?
>>>>
>>>> Thanks.
>>>>
>>>> --
>>>> Best Regards,
>>>> Rajasekar Karthik
>>>> karthik085 at gmail.com
>>>> _______________________________________________
>>>> Bioperl-l mailing list
>>>> Bioperl-l at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
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>>
>>
>>
>> --
>> Best Regards,
>> Rajasekar Karthik
>> karthik085 at gmail.com
>>
>
>
>
> -- 
> Best Regards,
> Rajasekar Karthik
> karthik085 at gmail.com
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