[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.0

[Chad Davis]

Strangely enough, I don't get that Bio::DB::Registry error on CentOS
5.2(x86_64)/Perl 5.8.8 (same setup as Dave, it seems), but I do still
get it on Ubuntu 8.10(i686)/Perl 5.10.0.

Chad

On Mon, Jan 26, 2009 at 12:52, Dave Messina <David.Messina at sbc.su.se> wrote:
> Thanks so much, Chris and everyone else, for your hard work on this release.
>
> All tests pass on CentOS 5.2, perl 5.8.8, but I am still seeing that weire
> Bio::DBRegistry warning:
>
> t/LocalDB/Registry.............................3/14
> --------------------- WARNING ---------------------
> MSG: Couldn't call new_from_registry() on [Bio::DB::Flat]
>
> ------------- EXCEPTION: Bio::Root::Exception -------------
> MSG: you must specify an indexing scheme
> STACK: Error::throw
> STACK: Bio::Root::Root::throw Bio/Root/Root.pm:357
> STACK: Bio::DB::Flat::new Bio/DB/Flat.pm:160
> STACK: Bio::DB::Flat::new_from_registry Bio/DB/Flat.pm:252
> STACK: Bio::DB::Registry::_load_registry Bio/DB/Registry.pm:164
> STACK: Bio::DB::Registry::new Bio/DB/Registry.pm:95
> STACK: t/LocalDB/Registry.t:51
> -----------------------------------------------------------
>
> ---------------------------------------------------
> t/LocalDB/Registry.............................ok
>
>
>
> This may simply be something funky in my local environment since no one else
> has corroborated, though.
>
>
> Dave
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