[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.0

Dave Messina David.Messina at sbc.su.se
Mon Jan 26 11:52:11 UTC 2009


Thanks so much, Chris and everyone else, for your hard work on this release.

All tests pass on CentOS 5.2, perl 5.8.8, but I am still seeing that weire
Bio::DBRegistry warning:

t/LocalDB/Registry.............................3/14
--------------------- WARNING ---------------------
MSG: Couldn't call new_from_registry() on [Bio::DB::Flat]

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: you must specify an indexing scheme
STACK: Error::throw
STACK: Bio::Root::Root::throw Bio/Root/Root.pm:357
STACK: Bio::DB::Flat::new Bio/DB/Flat.pm:160
STACK: Bio::DB::Flat::new_from_registry Bio/DB/Flat.pm:252
STACK: Bio::DB::Registry::_load_registry Bio/DB/Registry.pm:164
STACK: Bio::DB::Registry::new Bio/DB/Registry.pm:95
STACK: t/LocalDB/Registry.t:51
-----------------------------------------------------------

---------------------------------------------------
t/LocalDB/Registry.............................ok



This may simply be something funky in my local environment since no one else
has corroborated, though.


Dave



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