[Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl

[Abhishek Pratap]

Hi All

I am looking for some code to parse the ACE file format. I have big ACE
files which I would like to trim based on the user defined Contig name and
specific region and write out the output to another fresh ACE file.

For now I am trying to tweak Bio::Assembly::IO; but it is kind of slow. Any
other alternative or suggestions.

Thanks All,
-Abhi








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Abhishek Pratap
Bioinformatics Software Engineer
Institute for Genome Sciences
School of Medicine, Univ of Maryland
801, W. Baltimore Street, Baltimore, MD 21209
Ph: (+1)-410-706-2296
www.igs.umaryland.edu/

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