[Bioperl-l] [ANNOUNCEMENT] Alpha 1.6 releases of BioPerl-run, BioPerl-db, BioPerl-network

[Chris Fields]

Alex,

I don't see Bio::ConfigData with the last BioPerl core release on CPAN  
(1.6.0) or any of the BioPerl-*.  Could you send me the actual file in  
question?

chris

On Feb 8, 2009, at 1:36 AM, Alex Lancaster wrote:

>>>>>> "CF" == Chris Fields  writes:
>
> CF> All,
> CF> I would like to announce that the first alpha releases for  
> BioPerl-
> CF> run, BioPerl-db, and BioPerl-network are available.  These are
> CF> designated as 1.005009_001, with a requirement for BioPerl 1.6 and
> CF> higher (1.006000).
>
> [...]
>
> CF> The archives can be downloaded from here:
>
> CF> BioPerl-run:
>
> CF> http://bioperl.org/DIST/BioPerl-run-1.5.9_1.tar.bz2
> CF> http://bioperl.org/DIST/BioPerl-run-1.5.9_1.tar.gz
> CF> http://bioperl.org/DIST/BioPerl-run-1.5.9_1.zip
>
> There seems to be some duplicated code that either should have been
> removed from either BioPerl or BioPerl-run, the files:
>
> /usr/lib/perl5/vendor_perl/5.10.0/Bio/ConfigData.pm
> /usr/share/man/man3/Bio::ConfigData.3pm.gz
>
> are currently installed by *both* BioPerl and BioPerl-run.  See the
> downstream Fedora bug for more details:
>
> http://bugzilla.redhat.com/show_bug.cgi?id=484495
>
> This causes the package set to fail to install.  Should ConfigData be
> in BioPerl or BioPerl-run?
>
> Thanks,
> Alex
>