[Bioperl-l] NCBI BlastPlus wrapper for your enjoyment

Chris Fields cjfields at illinois.edu
Sat Dec 19 22:44:46 UTC 2009


Very nice!  We'll definitely give it a try here (along with the requisite feedback, of course).

chris

On Dec 19, 2009, at 1:52 PM, Mark A. Jensen wrote:

> Hi All, 
> 
> Your full-service BLAST wrapper, Bio::Tools::Run::StandAloneBlastPlus,
> is at beta in the bioperl-run trunk. It wraps all the programs of the 
> NCBI's new blast+-2.2.22 suite 
> ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
> and integrates them, allowing you to create, mask, and query 
> databases from within a single factory object. See the HOWTO
> http://www.bioperl.org/wiki/HOWTO:BlastPlus
> for the usual usage and implementation details.
> 
> Happy coding--
> MAJ 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l





More information about the Bioperl-l mailing list