[Bioperl-l] problem with install
Jason Stajich
jason at bioperl.org
Mon Dec 14 01:24:26 UTC 2009
Hi Eric -
Bio::Tools::BPlite is no longer supported in Bioperl - it was
deprecated several releases ago.
It was replaced with Bio::SearchIO
-jason
On Dec 13, 2009, at 3:15 PM, eric_donaldson at med.unc.edu wrote:
> Hello,
>
> Today I downloaded bioperl 1.61 on my new macbook pro using fink. I
> used the
>
> fink install bioperl.pm-588 as I could not get it to instal using
> the perl version 5.10.
>
> But now I get an error when trying to run a bioperl script.
>
> Here is the error:
>
> Can't locate Bio/Tools/BPlite.pm in @INC (@INC contains: /sw/lib/
> perl5/darwin-thread-multi-2level /sw/lib/perl5 /sw/lib/perl5/darwin /
> Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-
> thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/
> darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/
> Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /
> Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-
> thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at
> blastparser.pl line 8.
> BEGIN failed--compilation aborted at blastparser.pl line 8.
>
>
> I am a novice at unix and bioperl so I do not know how to
> troubleshoot this, would you please hleo me?
>
> Thank you,
>
> Eric
>
>
> Eric F. Donaldson, Ph.D.
> Research Assistant Professor, Ralph Baric Lab
> University of North Carolina
> Department of Epidemiology
>
>
> <eric_donaldson.vcf>_______________________________________________
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--
Jason Stajich
jason.stajich at gmail.com
jason at bioperl.org
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