[Bioperl-l] How to read in the whole fasta file in the memory?

Peng Yu pengyu.ut at gmail.com
Wed Dec 30 12:26:45 EST 2009


With Bio::SeqIO, I can only read in the records in a fasta file one by
one. This is preferable if there are many records in a file.

But I also want to read all the records in. I could use a while loop
to read all records in. But could somebody let me know if there is a
function in bioperl that can read in all the record at once and return
me an object?

http://www.bioperl.org/wiki/HOWTO:SeqIO


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