[Bioperl-l] GO::Parser / GO::Model::Term

[Bernd Web]

Dear Gowthaman,

A non-BioPerl solution: the Ontology Lookup service at EBI. It also
provides a web service interface.

http://www.ebi.ac.uk/ontology-lookup/

citrulline metabolic process has to be selected from the pull-down
list in the interactive page. This will return the ID (GO:0000052) and
addional info:

definition	The chemical reactions and pathways involving citrulline,
N5-carbamoyl-L-ornithine, an alpha amino acid not found in proteins.
preferred name	citrulline metabolic process
exact synonym	citrulline metabolism
subset	Prokaryotic GO subset
xref_definition	ISBN:209853"Oxford Dictionary of Biochemistry and
Molecular Biology"

The webservice is described at
http://www.ebi.ac.uk/ontology-lookup/WSDLDocumentation.do


Regards,
Bernd


On Mon, Dec 14, 2009 at 8:16 PM, Gowthaman Ramasamy
<gowthaman.ramasamy at sbri.org> wrote:
>
> Hi All,
> I have a list of GO terms. And would like to pull GO accessions for them.
> I can easily do the revere of it using get_term("GO::00000051").
>
> But can someone tell me how to get the GO accessions from GO Terms , for eg: retrive GO accession for "citrulline metabolic process".
>
>
> Thanks very much,
> Gowtham
>
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