[Bioperl-l] problem with install

[Jason Stajich]

Hi Eric -

Bio::Tools::BPlite is no longer supported in Bioperl - it was  
deprecated several releases ago.
It was replaced with Bio::SearchIO

-jason
On Dec 13, 2009, at 3:15 PM, eric_donaldson at med.unc.edu wrote:

> Hello,
>
> Today I downloaded bioperl 1.61 on my new macbook pro using fink.  I  
> used the
>
> fink install bioperl.pm-588 as I could not get it to instal using  
> the perl version 5.10.
>
> But now I get an error when trying to run a bioperl script.
>
> Here is the error:
>
> Can't locate Bio/Tools/BPlite.pm in @INC (@INC contains: /sw/lib/ 
> perl5/darwin-thread-multi-2level /sw/lib/perl5 /sw/lib/perl5/darwin / 
> Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin- 
> thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/ 
> darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/ 
> Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 / 
> Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin- 
> thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at  
> blastparser.pl line 8.
> BEGIN failed--compilation aborted at blastparser.pl line 8.
>
>
> I am a novice at unix and bioperl so I do not know how to  
> troubleshoot this, would you please hleo me?
>
> Thank you,
>
> Eric
>
>
> Eric F. Donaldson, Ph.D.
> Research Assistant Professor, Ralph Baric Lab
> University of North Carolina
> Department of Epidemiology
>
>
> <eric_donaldson.vcf>_______________________________________________
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--
Jason Stajich
jason.stajich at gmail.com
jason at bioperl.org