[Bioperl-l] about bioperl issue

[Dave Messina]

Hi Reginald,

Please keep all replies on the list so that everyone can follow the thread.

In a separate email, Scott gave the answer you were looking for,  I think.

Namely:
   $hsp->query_string()
OR
   $hsp->hit_string()



Dave




On Dec 10, 2009, at 16:31, Hsueh wrote:

> Dear Dave Messina
> 
> I need to get the string that is "ctctttactcttaggtttacccgccggggtatcgtggcaaacaaggatagtttaaacaga".
> 
> Thank you
> 
> Reginald Hsueh
> 
> ------------------------------------------------------------------------------------------------------------------------------
> Query: 147 ctctttactcttaggtttacccgccggggtatcgtggcaaacaaggatagtttaaacaga 206
>                  |||||| ||||||||||||||||||    |||| || ||||||  |||||||||||| ||
> Sbjct: 114   ctcttttctcttaggtttacccgccaatatatcctgtcaaacactgatagtttaaactga 173
> ------------------------------------------------------------------------------------------------------------------------------
> 
> 
> 
> 
> --------------------------------------------------
> From: "Dave Messina" <David.Messina at sbc.su.se>
> Sent: Thursday, December 10, 2009 11:09 PM
> To: "Hsueh" <lovebaby39 at gmail.com>
> Cc: <bioperl-l at bioperl.org>
> Subject: Re: [Bioperl-l] about bioperl issue
> 
>> Hi Reginald,
>> 
>> None of the words in your email or the attachment are colored red — unfortunately any kind of formatting tends to get removed from emails send to mailing lists.
>> 
>> Could you be more specific about what part of the blast report you are not able to get? You could even just copy and paste that particular bit of the report into your reply if it's not clear what to call it.
>> 
>> 
>> Dave