[Bioperl-l] AlignIO error with aligments containing an all-gap sequence

[Dave Messina]

>
> Is this using bioperl-live?


Sorry, should've said before. Yes, it's bioperl-live (r15927).


 I recall this being a problem but I thought it was addressed in svn (and
> soon in the next point release).


Hmm, the only recent somewhat related change I see (in Bio::AlignIO::*,
anyway) is:

------------------------------------------------------------------------
r15753 | cjfields | 2009-06-10 05:51:38 +0200 (Wed, 10 Jun 2009) | 2 lines

deprecate no_sequences/no_residues in main trunk (we can switch the version
to 1.7 if deemed necessary)
------------------------------------------------------------------------


Perhaps this is what you were thinking of?


Dave