[Bioperl-l] Problems with Bioperl-ext package on WinVista?

[Mark A. Jensen]

Jonny,
You need the HMMER application, which is not part of BioPerl.
See http://hmmer.janelia.org/ for download options.
MAJ
----- Original Message ----- 
From: "Jonny Dalzell" <jdalzell03 at qub.ac.uk>
To: <Bioperl-l at lists.open-bio.org>
Sent: Tuesday, August 11, 2009 2:52 PM
Subject: Re: [Bioperl-l] Problems with Bioperl-ext package on WinVista?


>
> Hi,
>
> I'm as sure as I can be.  I look in the HHMER folder and it contains
> "Domain.pm", "Results.pm", and "Set.pm".  I thought perhaps it was something
> to do with @INC, but I put
> "use lib "strawberry/per/lib C:/strawberry/perl/site/lib/Bio/Tools/";" at
> the top of my script, which definately encompasses the directory it should
> be in, and I still get...
>
> "Can't locate Bio/Tools/HMM.pm in @INC (@INC contains: strawberry/per/lib
> C:/strawberry/perl/site/lib/
> Bio/Tools/ C:/strawberry/perl/lib C:/strawberry/perl/site/lib .) at HMM.txt
> line 5.
> BEGIN failed--compilation aborted at HMM.txt line 5."
>
> I'm out of ideas.
>
> Jonny
> -- 
> View this message in context: 
> http://www.nabble.com/Problems-with-Bioperl-ext-package-on-WinVista--tp24919498p24923606.html
> Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
>