[Bioperl-l] Percentage Similarity

[K. Shameer]

Hello Shalabh,

You may try ALISTAT. Available as a part of SQUID library from Prof. Sean
Eddy. Make an alignment of your 100 sequences and use alignment as input
of ALISTAT. ftp://selab.janelia.org/pub/software/squid/

Best,
Khader Shameer

> 2009/7/28 shalabh sharma <shalabh.sharma7 at gmail.com>:
>> Hi All,          I have some protein sequences (around 100) i need to
>> find
>> overall percentage similarity between them.
>> How i can do that?
>
> Tried using blast?
>
> You can download that.
>
>
> Try asking in irc://irc.freenode.net/#bioinformatics
>
> Dan.
>
>
>>
>> Thanks
>> Shalabh
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