[Bioperl-l] extracting ORGANISM line from genbank file

[Hilmar Lapp]

Hi Anna:

On Aug 25, 2009, at 3:09 AM, Anna Kostikova wrote:

> Actually, my final aim is to get 2 files: first one is a fasta file  
> with all the sequences, and the seconds one is simply a list of  
> species names


Then I'd change your script to write two files: one with the sequences  
in FASTA format (you can use Bio::SeqIO for that), and the second one  
in the format you need it (one species name per line?).

(Right now you are writing one file in Genbank format, which is quite  
unlike the above, right?)

	-hilmar
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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