[Bioperl-l] Fwd: problem with bioperl (where's the Mus?)

[Hilmar Lapp]

On Aug 24, 2009, at 1:16 PM, Sendu Bala wrote:

>> This points to a problem in Bio::Species::scientific_name(), given  
>> that binomial() is correct. Could you file this as a bug report?
>
> What code creates the Bio::Species object here? I suspect this code  
> isn't aware of changes in Bio::Species since BioPerl 1.5.2.

I see. Any pointer to what would tell me what I need to change or is  
everything in the Bio::Species POD?

BTW what the Bioperl-db code does is instantiate the blank object and  
then populate it through its accessors (mostly the classification()  
array). If what it has been doing in the past is now considered  
incorrect, at least it doesn't raise any warning that would alert one  
to that ...

	-hilmar

-- 
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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