[Bioperl-l] Exact codon numbering
Mato Nagel
nagel at moldiag.de
Tue Apr 21 14:31:29 UTC 2009
Dear colleagues,
I spend this evening browsing all your information but didn't succeed in
finding a module that translates feature data (CDS and mRNA) into codon
numbering.
I developed a routine that from an NCBI xml-file creates a structure
$exonstructure =[ splice_variant_1->[exon_1->{mRNA_from ->'1',
mRNA_to->'something',
cDNA_from->'something',
cDNA_to->'something',
CDS_from->'something',
CDS_to->'something',
}
exon_2->{...}
...
]
splice_variant_2 [... ]
]
I wonder if it is worth publishing this routine in BioPerl.
Looking forward to receiving an answer.
Sincerely Yours
Mato Nagel
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