[Bioperl-l] Pasing Affymatrix Microarray output

[Chris Fields]

Would definitely be worth testing out interactivity with these.

chris

On Apr 8, 2009, at 12:59 AM, Steve Chervitz wrote:

> Check out our Affymetrix Power Tools (APT) package:
>
> http://www.affymetrix.com/partners_programs/programs/developer/tools/powertools.affx
>
> We distribute binaries for Linux and Mac OSX, as well as source code
> so you can compile it yourself if you want. Note however that this is
> written in C++, not Perl.  We don't provide SWIG or XS interfaces for
> direct access via Perl, though this would definitely be doable, if
> anyone is interested.
>
> Probably the easiest approach from Perl would be to simply call the
> appropriate APT executable through the shell as in:
>
>    system("/path/to/apt --args ...");
>
> The Perl code can parse the output files and take it from there.
>
> Steve
>
>
> On Tue, Apr 7, 2009 at 7:10 PM, Sean Davis <sdavis2 at mail.nih.gov>  
> wrote:
>> On Tue, Apr 7, 2009 at 9:39 PM, Wen-Zhi WANG <wenzhiwang1983 at yahoo.com.cn 
>> >wrote:
>>
>>> Dear all,
>>>
>>> Recently, I focus on population genomics data outputed by affymatrix
>>> microarray system. However, softwares which designed by affy. inc  
>>> only run
>>> in Windows 386 platform. Is there any application can used in Linux?
>>> Bio::Affymatrix was not strong enough to get the detailed  
>>> informaton.
>>>
>>
>> You may want to look at a non-bioperl solution such as Bioconductor (
>> http://bioconductor.org).
>>
>> Sean
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