[Bioperl-l] undefined sub-sequence with a single base

Mark A. Jensen maj at fortinbras.us
Sat Nov 29 09:38:06 EST 2008


## sorry about the multi-post

All-
Thought I would throw this up to this thread. Patch to 
http://bugzilla.open-bio.org/show_bug.cgi?id=2476
using mapping-aware subseq() seems to solve the problem. It appears to 
translate cleanly between
aas and nts, and gives single-residue subseqs naturally (even at the 
boundaries). Comments please...
cheers Mark 



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