[Bioperl-l] these objects are pretty cool

[Jason Stajich]

it's got methods that you need to call to get the data.  Did you try  
looking at any of the howtos - they discuss this sort of thing.

http://bioperl.org/wiki/HOWTOs

-jason
On Mar 22, 2008, at 10:39 PM, mrphysh at juno.com wrote:

>
> I am starting to understand how to use the objects.
>
> I am the sort who wants to understand how things work, at least on  
> some level.  I think my understanding wold be increased with  
> knowledge of the actual contents of the object.  My book says they  
> are hashes and that makes sense:  field-value.......field- 
> value.......field-value
>
> But as far as I can tell they cannot be taken apart like a regular  
> hash.
>
> How can I print out the contents?  this makes sense to me:
> xxxxxxxxxxxxxxxx
> use Bio::SeqIO;
>
> #these objects were made for file input...conversion...file output
>
> while ( my $seq = $out->next_seq() ) {print "$seq\n"; }
>
> #or..how about this?
>
> foreach ( my $seqq = $in->next_seq() ) {print "$seqq\n"; }
> xxxxxxxxxxxxxx
> this gives back:
>
> Bio::Seq::RichSeq=HASH(0x860dcdc)
> Bio::Seq=HASH(0x85f5a20)
>
> Is there some way to slice up the object and look at the parts?
>
> John
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