[Bioperl-l] BioPerl Module to Parse Transfac Flat File Database

[Edward Wijaya]

Dear experts,

Is there any? The TRANSFAC text file which contain entry like this.
Especially we wich to capture the PWM for each of the Transcription
factor.

Regards,
Edward

__BEGIN__
VV  TRANSFAC MATRIX TABLE, Release 11.1 - licensed - 2007-03-31, (C)
Biobase GmbH
XX
//
AC  M00001
XX
ID  V$MYOD_01
XX
DT  19.10.1992 (created); ewi.
DT  22.10.1997 (updated); dbo.
CO  Copyright (C), Biobase GmbH.
XX
NA  MyoD
XX
DE  myoblast determination gene product
XX
BF  T00526; MyoD; Species: mouse, Mus musculus.
BF  T09177; MyoD; Species: mouse, Mus musculus.
XX
P0      A      C      G      T
01      1      2      2      0      S
02      2      1      2      0      R
03      3      0      1      1      A
04      0      5      0      0      C
05      5      0      0      0      A
06      0      0      4      1      G
07      0      1      4      0      G
08      0      0      0      5      T
09      0      0      5      0      G
10      0      1      2      2      K
11      0      2      0      3      Y
12      1      0      3      1      G

....etc....