[Bioperl-l] IUPAC support for DNA alignment

[Yee Man Chan]

How about I implement the full score version first? I am going to do it
as specified in my previous email.

I can also add comments to ask people to specify their own matrix.

Yee Man

On Wed, 2 Jul 2008, Alexie Papanicolaou wrote:

> clarifying (also sorry for the double post before).
>
> "equally likely" => "found in sample in which case it is match"
>
> right it's dark outside, time to go home.
> a
>
> >
> >
> > I dunno about Ns too. They could be unknown characters (in which case
> > full score version could be 0 as well) or really mean all four
> > nucleotides are equally likely.
>