[Bioperl-l] finding sequence 2000 bp upstream in bioperl?

[Brian Osborne]

Richard,

Some approaches are discussed here:

http://www.bioperl.org/wiki/HOWTO:Getting_Genomic_Sequences


Brian O.

On Jul 2, 2008, at 2:10 PM, RICHARD GREEN wrote:

> Howdy Bioperlers,
>
> Quick question, I have scripts that pull out a sequence from  
> genbank, but I am looking for a command that would extract 2000 base  
> pairs upstream of the sequence. Is there a way to extract just the  
> Gene promoter region from genbank? Any advice that folks can give me  
> a is muchly appreciated.
>
> Thanks again
>
> -Rich Green
>
>
>
>
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