[Bioperl-l] BioPerl Candidate Release 1.6

Wesley Arthur wesleyarthur at optusnet.com.au
Fri Dec 26 02:28:31 UTC 2008


JESUS IS LORD!

To Chris Fields and the other Bioperl Developers,
                                                                       Thank you for the new candidate 1.6 release of Bioperl.  I attempted to install this last night using ppm. The status Tab seemed to indicate a success with the following errors;

STATUS  TAB

Synchronizing Database ... 

  Downloading ActiveState Package Repository packlist ... done

  Updating ActiveState Package Repository database ... done

  Downloading BioPerl-Regular Releases packlist ... not modified

  Downloading Kobes packlist ... done

  Updating Kobes database ... done

  Downloading Bribes  packlist ... done

  Updating Bribes  database ... done

  Downloading tcool packlist ... done

  Updating tcool database ... done

  Downloading tcool packlist ... done

Synchronizing Database done

Downloading ActiveState Package Repository packlist ... not modified

Downloading BioPerl-Regular Releases packlist ... not modified

Downloading BioPerl-Release Candidates packlist ... done

Updating BioPerl-Release Candidates database ... done

Synchronizing Database ... 

  Downloading ActiveState Package Repository packlist ... not modified

Synchronizing Database done

BioPerl marked for install

BioPerl depends on Bundle-BioPerl-Core

BioPerl depends on Math-Random

BioPerl depends on SVG-Graph

BioPerl depends on Bio-ASN1-EntrezGene

BioPerl depends on Data-Stag

BioPerl depends on Algorithm-Munkres

BioPerl depends on GraphViz

BioPerl depends on XML-Writer

BioPerl depends on Graph

BioPerl depends on XML-DOM-XPath

BioPerl depends on PostScript

BioPerl depends on Spreadsheet-ParseExcel

BioPerl depends on XML-SAX

BioPerl depends on AcePerl

BioPerl depends on Array-Compare

BioPerl depends on Convert-Binary-C

BioPerl depends on XML-Twig

BioPerl depends on Set-Scalar

BioPerl depends on libxml-perl

BioPerl depends on XML-SAX-Writer

BioPerl depends on Clone

BioPerl depends on DB_File

BioPerl depends on SVG

BioPerl depends on Math-Derivative

BioPerl depends on Math-Spline

BioPerl depends on Statistics-Descriptive

BioPerl depends on Tree-DAG_Node

BioPerl depends on IPC-Run

BioPerl depends on XML-DOM

BioPerl depends on XML-XPathEngine

BioPerl depends on IO-stringy

BioPerl depends on OLE-Storage_Lite

BioPerl depends on Ocsinventory-Agent

BioPerl depends on Cache-Cache

BioPerl depends on Text-Iconv

BioPerl depends on XML-Filter-BufferText

BioPerl depends on XML-NamespaceSupport

BioPerl depends on XML-RegExp

BioPerl depends on Error

Synchronizing Database ... 

  Downloading ActiveState Package Repository packlist ... not modified

Synchronizing Database done

BioPerl marked for install

BioPerl depends on Bundle-BioPerl-Core

BioPerl depends on Math-Random

BioPerl depends on SVG-Graph

BioPerl depends on Bio-ASN1-EntrezGene

BioPerl depends on Data-Stag

BioPerl depends on Algorithm-Munkres

BioPerl depends on GraphViz

BioPerl depends on XML-Writer

BioPerl depends on Graph

BioPerl depends on XML-DOM-XPath

BioPerl depends on PostScript

BioPerl depends on Spreadsheet-ParseExcel

BioPerl depends on XML-SAX

BioPerl depends on AcePerl

BioPerl depends on Array-Compare

BioPerl depends on Convert-Binary-C

BioPerl depends on XML-Twig

BioPerl depends on Set-Scalar

BioPerl depends on libxml-perl

BioPerl depends on XML-SAX-Writer

BioPerl depends on Clone

BioPerl depends on DB_File

BioPerl depends on SVG

BioPerl depends on Math-Derivative

BioPerl depends on Math-Spline

BioPerl depends on Statistics-Descriptive

BioPerl depends on Tree-DAG_Node

BioPerl depends on IPC-Run

BioPerl depends on XML-DOM

BioPerl depends on XML-XPathEngine

BioPerl depends on IO-stringy

BioPerl depends on OLE-Storage_Lite

BioPerl depends on Ocsinventory-Agent

BioPerl depends on Cache-Cache

BioPerl depends on Text-Iconv

BioPerl depends on XML-Filter-BufferText

BioPerl depends on XML-NamespaceSupport

BioPerl depends on XML-RegExp

BioPerl depends on Error

Installing 40 packages ... 

  Downloading BioPerl-1.5.9_1 ... done

  Downloading Bundle-BioPerl-Core-1.5.9_1 ... not found

Installing 40 packages failed

 

ERROR: 404 Not Found



I thought I would report this to you.  I assume that this means candidate 16 has installed successfully and that it has upgraded the previous 1.5.2 to 1.6.  

I am very new to bioperl and have been studying you HOW-TO section.  I don't know much about this but would like to help if you have something for me to do.  However I am not a programmer.  If it is too much of a distraction for you, do not respond.  I do not mind hearing what you think about the error messages, but it is not urgent.

Have a Happy new year all of you.

Wesley Arthur.



 



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