[Bioperl-l] problem with bp_genbank2gff3.pl

[Scott Cain]

Hello Anjan,

Did you install BioPerl?  If so, what version?  You shouldn't really
need to copy and paste bp_genbank2gff3.pl; it should just be there.
The error message you got implies that BioPerl isn't installed or
isn't installed correctly.

Scott


On Mon, Dec 1, 2008 at 5:05 PM, ANJAN PURKAYASTHA
<anjan.purkayastha at gmail.com> wrote:
> hi,
> i copied and pasted the genbank2gff3.pls script into a file
> /usr/bin/bp_genbank2gff3.pl and tried running it.
> error message:
> Can't locate object method "FT_SO_map" via package
> "Bio::SeqFeature::Tools::TypeMapper" at /usr/bin/bp_genbank2gff3.pl line
> 285.
>
> any idea how i get to the map FT_SO_map method?
> thanks,
> anjan
>
> --
> =============================
> anjan purkayastha, phd
> bioinformatics analyst
> whitehead institute for biomedical research
> nine cambridge center
> cambridge, ma 02142
>
> purkayas [at] wi [dot] mit [dot] edu
> 703.740.6939
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-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research