[Bioperl-l] alignment by TCoffee as a subroutine
bix at sendu.me.uk
Tue Apr 29 16:54:41 UTC 2008
sergei ryazansky wrote:
> I am trying to perform TCoffe aligment by
> Bio::Tools::Run::Alignment::TCoffee wrapper as subroutine into the
> script. This subroutine works fine, but it is not single subroutine -
> there are a lot of other ones in the script. The problem is when
> compilation of script finish execution (nb! successful execution) of
> tcoffee subroutine the compiliation of the end of the script also
> interrupted. It seems that the tcoffee program itself induce
> interraption of perl compilation. Is it possible to pass this problem?
You'll have to supply us with a minimal version of the script and the
complete error message.
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