[Bioperl-l] WebBlat, where'd it go?

Spiros Denaxas spiros at lokku.com
Wed Apr 23 19:48:12 UTC 2008


a quick look at the list of deprecated modules reveals that it has
indeed been removed,



On Wed, Apr 23, 2008 at 8:39 PM, Arkady <bamboowarrior at gmail.com> wrote:
> Hi folks,
>  I'm trying to use BioPerl to run a BLAT search on the four primate
>  genomes on UCSC. I understand that the proper tool for this is
>  Bio::Tools::WebBlat. Unfortunately, it doesn't appear to be in my
>  bioperl distribution (nor do I even know how to figure out what
>  version that is, unfortunately, though it's a very recent install -- a
>  month ago?). I also can't find it on CPAN. Is this deprecated? Has
>  something else replaced it? Or are we always supposed to run local
>  BLAT?
>  Thanks.
>  John Woods
>  Institute for Cellular and Molecular Biology
>  The University of Texas at Austin
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