[Bioperl-l] index::abstract on win and unix

[Jason Stajich]

do you want the LOCUS or the ACCESSION?
Do you mean the result is the completely wrong record or just the  
wrong field?
accession number is available from the seq's accession_number() method.
-jason
On Apr 16, 2008, at 2:39 PM, Frédéric Romagné wrote:

> Well, if with input file you mean the database used, it's created
> with Bio::Index::GenBank from a ncbi FTP's genbank file.
>
> $id is an accession number read from a file but i chomp the line...
>
> I am trying to install the svn version of bioperl under windows to see
> if there is an improvement.
>
> Le jeudi 17 avril 2008 à 08:49 +1200, Smithies, Russell a écrit :
>> Did you check the format of your input file?
>> i.e. DOS or UNIX line endings?
>>
>>> -----Original Message-----
>>> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- 
>>> bounces at lists.open-
>>> bio.org] On Behalf Of Frédéric Romagné
>>> Sent: Thursday, 17 April 2008 5:25 a.m.
>>> To: bioperl-l at lists.open-bio.org
>>> Subject: [Bioperl-l] [bioperl-l] index::abstract on win and unix
>>>
>>> Hello,
>>> i made a program which use Bio::Index::GenBank and i tested it under
>>> unix, that worked well.
>>>
>>> But i have to launch it under windows and it seems not to work on.
>>>
>>> Here is the problem :
>>>
>>> my $dbobj = Bio::Index::Abstract->new("Data/$db");
>>> my $seq = $dbobj->get_Seq_by_acc($id);
>>> print $seq->display_id."\n";
>>>
>>> did not print the same number than $id !!! So i don't work on the
>>> sequence expected...
>>>
>>> I use the SVN sources on unix and the Perl package manager for
>>> windows...
>>>
>>> Thanks.
>>>
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
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