[Bioperl-l] **Fwd: Re: divide and blast blastunsplit blast subsequence

[Kevin Lam]

wow thanks for the replies!
I have gotten the answer from the blast help

Subsequence range can be specified by the –L parameter. Please refer
to this web document for more information:

http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/blastall/blastall_node60.html



Other end-user oriented standalone blast documents are at:

http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/


but will try this method as well to see which works better.

cheers!
kevin

There is a script that comes with the bioperl core distribution,

> bp_split_seq.pl, which does this.  Here's the CVS location:
>
> http://cvs.bioperl.org/cgi-bin/viewcvs/viewcvs.cgi/bioperl-live/
> scripts/seq/?cvsroot=bioperl
>
> chris
>