[Bioperl-l] Adding info to Features to view in SwissProt

[Chris Fields]

Try adding it as a tag value with the name 'description','note', or  
'product' (the first two are probably the best to use for most  
purposes).  There is a quick explanation here:

http://www.bioperl.org/wiki/HOWTO:Feature- 
Annotation#Building_Your_Own_Sequences

You can also do something like:

$sf->add_tag_value('description', 'Helicase ATP-binding');

See Bio::SeqFeature::Generic POD for more.

chris

On Oct 4, 2007, at 8:43 AM, Aidan Budd wrote:

> Hi bioperlers,
>
> I've been trying to add info to a feature in a RichSeq object so  
> that when
> the Seq is written in swissprot format I can put information in the  
> final
> field of the feature
>
> FT   DOMAIN      208    392       Helicase ATP-binding.
>
> i.e. where it says "Helicase ATP-binding."
>
> I can control what goes in the primary field, and set the location,  
> but
> haven't been able to work out how to add info to go in this final  
> field.
>
> Thanks,
>
> Aidan
>
> -- 
> ----------------------------------------------------------------------
> Aidan Budd, PhD                               tel:+49 (0)6221 387 8530
> EMBL - European Molecular Biology Laboratory  fax:+49 (0)6221 387 8517
> Meyerhofstr. 1, 69117 Heidelberg, Germany
>
> URL: http://www-db.embl.de/jss/EmblGroupsHD/per_1807.html
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign