[Bioperl-l] problem with Bioperl get_sequence ('swiss', "acc#");
juheymann at yahoo.com
Tue May 8 18:37:20 UTC 2007
I installed bioperl under OSX Tiger via Fink. I tested the installation
using the test tutorial via: perl -w bptutorial.pl 5
The script failed indicating that the file to retrieve was missing. To
identify the problem, I used a script using 'get_sequence' that will
retrieve a file from 'genbank' or 'embl'. Both succeeded. If I replace it
with 'swiss' or 'swissprot' and substitute the ID with the identical ID as
in the tutorial, I am recreating the problem found with bptutorial.pl. Other
ID's do the same.
Any pointers on the origin of this finding would be greatly appreciated.
View this message in context: http://www.nabble.com/problem-with-Bioperl-get_sequence-%28%27swiss%27%2C-%22acc-%22%29--tf3711391.html#a10381379
Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
More information about the Bioperl-l