[Bioperl-l] Bio::Graphics

Lincoln Stein lincoln.stein at gmail.com
Tue Sep 26 13:33:05 UTC 2006


Hi,

I think you're referring to the SYNOPSIS? If so, I found a typo:

These lines:

 $panel->add_track($seq,
>            -glyph  => 'generic',
>            -bgcolor => 'blue',
>            -label  => 1,
>           );



should be replaced with this:

 $panel->add_track($wholeseq,
>            -glyph  => 'generic',
>            -bgcolor => 'blue',
>            -label  => 1,
>           );


This is now fixed in bioperl-live.

Lincoln

On 9/26/06, sergei ryazansky <dr.hogart at gmail.com> wrote:
>
> Hi all,
> I run the example script from perldoc Bio::Graphic as
>         perl image.pl I_factor.gb > image.png
> and obtain the following
>         Can't locate object method "start" via package "Bio::Seq::RichSeq"
> at
> c:/Perl/si
>         te/lib/Bio/Graphics/Feature.pm line 269, <DATA> line 191.
> What does it mean?
> Is it bug or not?
>
> --
>
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> Bioperl-l at lists.open-bio.org
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>



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Lincoln D. Stein
Cold Spring Harbor Laboratory
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